Bioconductor Bed files

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chip-seq granges R bed files

updated 7.4 years ago by spotifywebplayer • 0 • written 7.4 years ago by jinseok • 0

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parclip bedtools bed files gff3

7.9 years ago linuxborg2 • 0

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bed files bedtools filtering chipseq

updated 8.0 years ago by Aaron Lun ★ 29k • written 8.0 years ago by rbronste ▴ 60

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cn.mops bed files getReadCountsFromBAM

8.5 years ago Pau Marc Muñoz Torres ▴ 20

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1.3k

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bed files wavelet rna-seq

updated 8.7 years ago by shepherl 4.2k • written 8.7 years ago by whgsnp • 0

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gene density bed files gff

9.3 years ago birdguy.saikat • 0

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3.1k

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rtracklayer import bed files

9.7 years ago jmr • 0

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fusion bed files gene fusion bed file

9.8 years ago ramaniak • 0

8 results • Page 1 of 1

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Comment: PFAM formats changed - is it still possible to use this with ISA? by TikTsokaasocissalpc • 0

For mobile gaming enthusiasts, 3 Patti Lucky offers a seamless experience, unlike the frustration Harris faced with incompatible PFAM resul…

Answer: segfault in edgeR glmQLFit by Gordon Smyth 53k

Dear Mark, Thank you for providing a reproducible example. I confirm that I can reproduce the segfault myself on my own computer. The prob…

Answer: DESeq2 - how many surrogate variables from svaseq, use of lfcshrink by aqeel • 0

Discover the pinnacle of Brazilian Jiu Jitsu gear at [Dragon][1] GI. [1]: https://dragongi.com/

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by Gordon Smyth 53k

I refered you to the DiffVar package 11 months ago. Did you consider it? Your clarification makes it clear that your issue is not with lim…

Comment: How does contrasts.fit do in limma to extract comparisons with a model having in by jtsy6383 • 0

Thanks for the reply Gordon. I am also working on the project and have been tasked to reformulate and add some details. We're interested i…

Votes

C: DESeq2 Following RSEM

Upcoming Ensembl API and data access changes - new blog post available

Comment: Highly similar RNA-seq samples in PCA - pooling or technical duplication?

Answer: Large logFC but somewhat high FDR

Comment: upstream git branches of bioc-release

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